{"id":41128,"date":"2026-03-23T15:06:13","date_gmt":"2026-03-23T14:06:13","guid":{"rendered":"https:\/\/www.idiv.de\/staff\/ioannis-kampouris\/"},"modified":"2026-03-23T15:16:49","modified_gmt":"2026-03-23T14:16:49","slug":"ioannis-kampouris","status":"publish","type":"staff-manager","link":"https:\/\/www.idiv.de\/de\/staff\/ioannis-kampouris\/","title":{"rendered":"Ioannis Kampouris"},"content":{"rendered":"    <div class=\"container\">\n        <div class=\"row pt-5 mb-5 profile-info\">\n            \n            <div class=\"col-md-6 offset-md-2\">\n                <div class=\"basic-info pt-3 text-md-start text-center\">\n                    <h2>\n                        Dr. \n                        Ioannis \n                        Kampouris                    <\/h2>\n                    <p>Postdoktorand Researcher<\/p>\n                                            <div class=\"groups\">\n                            <a href=\"https:\/\/www.idiv.de\/research\/projects\/#flexpool\" class=\"nmb btncf arrow pe-3\">Flexpool <svg xmlns=\"http:\/\/www.w3.org\/2000\/svg\" width=\"7.621\" height=\"12.243\" viewBox=\"0 0 7.621 12.243\"><path id=\"Icon_feather-chevron-right\" data-name=\"Icon feather-chevron-right\" d=\"M17.5,17l-4-4,4-4\" transform=\"translate(19.621 19.121) rotate(180)\" fill=\"none\" stroke=\"#447226\" stroke-linecap=\"round\" stroke-linejoin=\"round\" stroke-width=\"3\"><\/path><\/svg><\/a>                        <\/div>\n                                    <\/div>\n            <\/div>\n            <div class=\"col-md-4 col-lg-4 text-center p-4\">\n                <img loading=\"lazy\" decoding=\"async\" width=\"472\" height=\"472\" src=\"https:\/\/www.idiv.de\/wp-content\/uploads\/2026\/03\/Kampouris-Ioannis.png\" class=\"img-fluid rounded-circle wp-post-image\" alt=\"Portrait of Ioannis Kampouris (Photo: private)\" srcset=\"https:\/\/www.idiv.de\/wp-content\/uploads\/2026\/03\/Kampouris-Ioannis.png 472w, https:\/\/www.idiv.de\/wp-content\/uploads\/2026\/03\/Kampouris-Ioannis-300x300.png 300w, https:\/\/www.idiv.de\/wp-content\/uploads\/2026\/03\/Kampouris-Ioannis-150x150.png 150w\" sizes=\"auto, (max-width: 472px) 100vw, 472px\" \/>            <\/div>\n            \n            \n                            <div class=\"col-md-6 offset-md-2\">\n                    <div class=\"affiliations\">\n                        <h4 class=\"affiliations-title\">Affiliationen<\/h4>\n                        <p class=\"affiliations-body\">\n                            Helmholtz-Zentrum f\u00fcr Umweltforschung \u2013 UFZ                        <\/p>\n                    <\/div>\n                <\/div>\n            \n            \n            \n            \n        <\/div>\n    <\/div>\n    \n\n<div class=\"textbildrepeater pb-24 pt-0 no-bg modulclass \" id=\"\">\n    <div class=\"container\">\n        <div class=\"row\">\n                                                                <div class=\"pb-24   mod_text  col-md-8 offset-md-2 pos_top\">\n                            <div class=\"textrepeater \" id=\"\">\n    <h2 style=\"text-align: center;\"><strong>Scientific profile<\/strong><\/h2>\n<p>I am a microbial ecologist with expertise in microbial bioinformatics and data analysis, especially for amplicon sequencing and metagenomics. In my PhD and postdoc work, I have conducted field experiments and guided lab experiments to uncover insights from the field experiments, supported by computational analysis. I am generally interested in how climatic conditions and anthropogenic impact shape soil and plant microbial communities, in terms of composition and functionality, and how microbes and their interactions can improve sustainable agriculture by boosting crop performance with a negligible impact on soil health. In addition, I often provide my computational expertise to projects focused on the dissemination of antibiotic resistance in the environment. My work at UFZ and iDIV primarily focuses on the ecology of soil viruses under different land-use management and climate conditions.<\/p>\n<h2 style=\"text-align: center;\"><strong>Work Experience<\/strong><\/h2>\n<p><strong>August 2025\u2013<\/strong><strong>Currently,<\/strong> <strong>Postdoctoral Researcher (UFZ\/iDiv) <\/strong>at Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany.<\/p>\n<p><strong>December 2022\u2013July 2025, Postdoctoral Researcher <\/strong>at Julius K\u00fchn-Institut, Braunschweig, Germany.<\/p>\n<p><strong>September 2021\u2013September 2022, Research Assistant<\/strong> at Aarhus University, Aarhus, Denmark<\/p>\n<p><strong>August 2019\u2013August 2021,<\/strong><strong> Research Assistant<\/strong> at Technische Universit\u00e4t Dresden, Department of Environmental Sciences, Institute for Hydrobiology, Dresden, Germany<\/p>\n<p><strong>August 2016\u2013August<\/strong><strong> 2019,<\/strong> Marie Curie Fellow (ANSWER-ITN) at Technische Universit\u00e4t Dresden, Department of Environmental Sciences, Institute for Hydrobiology, Dresden, Germany<\/p>\n<h2 style=\"text-align: center;\"><strong>Education<\/strong><\/h2>\n<p><strong>March 2017\u2013March 2022, <\/strong><strong>Doctor of Philosophy (PhD)<br \/>\n<\/strong>Technische Universit\u00e4t Dresden, Department of Hydrosciences, Institute for Hydrobiology, Dresden, Germany<\/p>\n<p><strong>Title of the dissertation:<\/strong> The impact of treated wastewater irrigation on the dissemination of antibiotic resistance in soil, subsoil and groundwater environments. Awarded with summa cum laude.<br \/>\n<strong>Supervisor: <\/strong>Prof. Thomas U. Berendonk<\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<p><strong>November 2013\u2013June 2016,<\/strong><strong> Master of Science (MSc) in Applied Genetics and Biotechnology<\/strong> Aristotle University of Thessaloniki, Faculty of Science, Department of Biology, University Campus, Thessaloniki,Greece,<\/p>\n<p><strong>Title of the graduation thesis:<\/strong> Isolation of microorganisms from wastewater sludge capable to degrade N-acyl-homoserine lactone and investigation of their role in the increase of efficiency membrane bioreactor treating wastewater. Grade: 10\/10.<br \/>\n<strong>Supervisors:<\/strong> Prof. Minas Yiangou and Prof. Petros Samaras.<\/p>\n<p>&nbsp;<\/p>\n<p><strong>September 2007\u2013July 2012<\/strong><strong>, Bachelor of Science (BSc) in Biochemistry and Biotechnology. <\/strong>University of Thessaly, School of Health sciences, Department of Biochemistry and Biotechnology, Larissa, Greece<\/p>\n<p>&nbsp;<\/p>\n<p><strong>Title of the graduation thesis:<\/strong> Detection of Mutations in Mitochondrial tRNA Genes in Normal Individuals and Patients with Alzheimer\u2019s Disease. Grade: 10\/10.<br \/>\n<strong>Supervisor: <\/strong>Dr. Aimilia Zifa<\/p>\n<h2 style=\"text-align: center;\"><strong>Peer Review Publications<\/strong><\/h2>\n<ul>\n<li>Gschwind R., Bonnet M., Abramova A., Jarqu\u00edn-D\u00edaz V.H., Wenne M., L\u00f6ber U., Godron N., <strong>Kampouris I.D.,<\/strong> Tskhay F., Nahid F., Debroucker C., Bui-Hai M., el Aiba I., Kl\u00fcmper U., Berendonk T.U., Forslund-Startceva S.K., Zahra R., Bengtsson-Palme J., Rupp\u00e9 E. (2026) Cefiderocol resistance genes identified in environmental samples using functional metagenomics. ISME J 20. <a href=\"https:\/\/doi.org\/10.1093\/ismejo\/wrag010\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1093\/ismejo\/wrag010<\/a><\/li>\n<li>Francioli, D., <strong>Kampouris, I. D.,<\/strong> Kuhl-Nagel, T., Babin, D., Sommermann, L., Behr, J. H., Chowdhury, S. P., Zrenner, R., Moradtalab, N., Schloter, M., Geistlinger, J., Ludewig, U., Neumann, G., Smalla, K., &amp; Grosch, R. (2025). Microbial inoculants modulate the rhizosphere microbiome, alleviate plant stress responses, and enhance maize growth at field scale. <em>Genome Biology 2025 26:1<\/em>, <em>26<\/em>(1), 1\u201329. <a href=\"https:\/\/doi.org\/10.1186\/S13059-025-03621-7\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1186\/S13059-025-03621-7<\/a><\/li>\n<li><strong>Kampouris, I. D<\/strong>., Kuhl-Nagel, T., Behr, J. H., Sommermann, L., Babin, D., Francioli, D., Zrenner, R., Kublik, S., Schloter, M., Ludewig, U., Smalla, K., Neumann, G., Grosch, R., &amp; Geistlinger, J. (2025). Selective recruitment of beneficial microbes in the rhizosphere of maize affected by microbial inoculants, farming practice, and seasonal variations. <em>Environmental Microbiome<\/em>, <em>20<\/em>(1), 1\u201320. <a href=\"https:\/\/doi.org\/10.1186\/S40793-025-00729-Y\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1186\/S40793-025-00729-Y<\/a><\/li>\n<li>Raab, M., Sch\u00fctz, L., Sommermann, L., Babin, D.,<strong> Kampouris, I.<\/strong>, Francioli, D., Grosch, R., Neumann, G., Deubel, A., Geistlinger, J., Bade, K., &amp; Rozhon, W. (2025). Two decades long-term field trial data on fertilization, tillage, and crop rotation focusing on soil microbes. <em>Scientific Data <\/em>, <em>12<\/em>(1). <a href=\"https:\/\/doi.org\/10.1038\/s41597-025-05314-z\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1038\/s41597-025-05314-z<\/a><\/li>\n<li>Soufi, L., <strong>Kampouris, I. D<\/strong>., L\u00fcneberg, K., Heyde, B. J., Pulami, D., Glaeser, S. P., Siebe, C., Siemens, J., Smalla, K., Grohmann, E., &amp; Gallego, S. (2025). Wastewater-borne pollutants influenced antibiotic resistance genes and mobile genetic elements in the soil without affecting the bacterial community composition in a changing wastewater irrigation system. <em>Journal of Hazardous Materials<\/em>, <em>494<\/em>. <a href=\"https:\/\/doi.org\/10.1016\/j.jhazmat.2025.138680\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.jhazmat.2025.138680<\/a><\/li>\n<li>Cerecetto, V., Leoni, C., Jurburg, S.D., <strong>Kampouris, I.D<\/strong>., Smalla, K., Babin, D., 2024. Pasture-crop rotations modulate the soil and rhizosphere microbiota and preserve soil structure supporting oat cultivation in the Pampa biome. Soil Biol. Biochem. 195, 109451. <a href=\"https:\/\/doi.org\/10.1016\/j.soilbio.2024.109451\">https:\/\/doi.org\/10.1016\/j.soilbio.2024.109451<\/a><\/li>\n<li>Alygizakis, N., Ng, K., \u010cirka, \u013d., Berendonk, T., Cerqueira, F., Cytryn, E., Deviller, G., Fortunato, G., Iakovides, I.C., <strong>Kampouris, I.D.<\/strong>, Michael-Kordatou, I., Lai, F.Y., Lundy, L., Manaia, C.M., Marano, R.B.M., Paulus, G.K., Pi\u00f1a, B., Radu, E., Rizzo, L., \u015alipko, K., Kreuzinger, N., Thomaidis, N.S., Ugolini, V., Vaz-Moreira, I., Slobodnik, J., Fatta-Kassinos, D., 2024. Making waves: The NORMAN antibiotic resistant bacteria and resistance genes database (NORMAN ARB&amp;ARG)\u2013An invitation for collaboration to tackle antibiotic resistance. Water Res. 257, 121689. <a href=\"https:\/\/doi.org\/10.1016\/j.watres.2024.121689\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.watres.2024.121689<\/a><\/li>\n<li>Behr, J.H., <strong>Kampouris, I.D.<\/strong>, Babin, D., Sommermann, L., Francioli, D., Kuhl-nagel, T., Chowdhury, S.P., Geistlinger, J., Smalla, K., Neumann, G., 2023. Bene fi cial microbial consortium improves winter rye performance by modulating bacterial communities in the rhizosphere and enhancing plant nutrient acquisition 1\u201317. <a href=\"https:\/\/doi.org\/10.3389\/fpls.2023.1232288\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.3389\/fpls.2023.1232288<\/a><\/li>\n<li><strong>Kampouris, I.D<\/strong>., Gr\u00fcndger G.F., Christensen J.F., Greer C.W., Kjeldsen K.U., Boone W., Meire L., Rysgaard S., Vergeynst L. 2022. Long-term patterns of hydrocarbon biodegradation and bacterial community composition in epipelagic and mesopelagic zones of an Arctic fjord J. Hazard. 446, 130656. <a href=\"https:\/\/doi.org\/10.1016\/j.jhazmat.2022.130656\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.jhazmat.2022.130656<\/a><\/li>\n<li><strong>Kampouris, I.D.<\/strong>, Kl\u00fcmper, U., Kramer, L., Sorum, H., Wedekind, H., Berendonk, T.U., 2022. Dissemination of antibiotic resistance in antibiotic-free recirculating aquaculture systems. J. Hazard. Mater. Adv. 8, 100201. <a href=\"https:\/\/doi.org\/10.1016\/j.hazadv.2022.100201\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.hazadv.2022.100201<\/a><\/li>\n<li><strong>Kampouris, I.D<\/strong>., Alygizakis, N., Kl\u00fcmper, U., Agrawal, S., Lackner, S., Cacace, D., Kunze, S., Thomaidis, N.S., Slobdonik, J., Berendonk, T.U., 2022. Elevated levels of antibiotic resistance in groundwater during treated wastewater irrigation associated with infiltration and accumulation of antibiotic residues. J. Hazard. Mater. 423, 127155. <a href=\"https:\/\/doi.org\/10.1016\/j.jhazmat.2021.127155\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.jhazmat.2021.127155<\/a><\/li>\n<li><strong>Kampouris, I.D.<\/strong>, Agrawal, S., Orschler, L., Cacace, D., Kunze, S., Berendonk, T.U., Kl\u00fcmper, U., 2021. Antibiotic resistance gene load and irrigation intensity determine the impact of wastewater irrigation on antimicrobial resistance in the soil microbiome. Water Res. 116818. <a href=\"https:\/\/doi.org\/10.1016\/j.watres.2021.116818\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.watres.2021.116818<\/a><\/li>\n<li><strong>Kampouris, I.D.,<\/strong> Kl\u00fcmper, U., Agrawal, S., Orschler, L., Cacace, D., Kunze, S., Berendonk, T.U., 2021. Treated wastewater irrigation promotes the spread of antibiotic resistance into subsoil pore-water. Environ. Int. 146. <a href=\"https:\/\/doi.org\/10.1016\/j.envint.2020.106190\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.envint.2020.106190<\/a><\/li>\n<li><strong>Kampouris, I.D.<\/strong>, Karayannakidis, P.D., Banti, D.C., Sakoula, D., Konstantinidis, D., Yiangou, M., Samaras, P.E., 2018. Evaluation of a novel quorum quenching strain for MBR biofouling mitigation. Water Res. 143, 56\u201365. <a href=\"https:\/\/doi.org\/10.1016\/j.watres.2018.06.030\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.watres.2018.06.030<\/a><\/li>\n<li>Alygizakis, N.A., Ur\u00edk, J., Beretsou, V.G.,<strong> Kampouris, I.<\/strong>, Galani, A., Oswaldova, M., Berendonk, T., Oswald, P., Thomaidis, N.S., Slobodnik, J., Vrana, B., Fatta-Kassinos, D., 2020. Evaluation of chemical and biological contaminants of emerging concern in treated wastewater intended for agricultural reuse. Environ. Int. 138, 105597. <a href=\"https:\/\/doi.org\/10.1016\/j.envint.2020.105597\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.envint.2020.105597<\/a><\/li>\n<li>Manaia, C.M., Rocha, J., Scaccia, N., Marano, R., Radu, E., Biancullo, F., Cerqueira, F., Fortunato, G., Iakovides, I.C., Zammit, I., <strong>Kampouris, I.<\/strong>, Vaz-Moreira, I., Nunes, O.C., 2018. Antibiotic resistance in wastewater treatment plants: Tackling the black box. Environ. Int. 115, 312\u2013324. <a href=\"https:\/\/doi.org\/10.1016\/j.envint.2018.03.044\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.envint.2018.03.044<\/a><\/li>\n<li>Rocha, J., Cacace, D., <strong>Kampouris, I.<\/strong>, Guilloteau, H., J\u00e4ger, T., Marano, R.B.M., Karaolia, P., Manaia, C.M., Merlin, C., Fatta-Kassinos, D., Cytryn, E., Berendonk, T.U., Schwartz, T., 2020. Inter-laboratory calibration of quantitative analyses of antibiotic resistance genes. J. Environ. Chem. Eng. 8, 102214. <a href=\"https:\/\/doi.org\/10.1016\/j.jece.2018.02.022\" target=\"_blank\" aria-label=\"open in new tab\" rel=\"noopener\">https:\/\/doi.org\/10.1016\/j.jece.2018.02.022<\/a><\/li>\n<\/ul>\n<\/div>\n                            <\/div>\n                        <\/div>\n    <\/div>\n<\/div>\n\n\n    <div class=\"headline pt-24 no-bg\"> <!-- Add dynamic background color class -->\n        <div class=\"container\">\n            <div class=\"row\">\n                <div class=\"col-md-12 relative\">\n                    <h2 class=\"h2 align-center\">iDiv Publikationen<\/h2>\n                <\/div>\n            <\/div>\n        <\/div>\n    <\/div>\n\n    <div id=\"\" class=\"pt-24 pb-24 no-bg\"> <!-- Add dynamic background color class -->\n    <div class=\"container\">\n        <div class=\"filters row justify-content-center\">\n            <div class=\"col-md-6\">\n                <!-- <span class=\"fa fa-search form-control-feedback\"><\/span> -->\n                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